Variant report

Variant	rs60132258
Chromosome Location	chr4:166422157-166422158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1530044	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17046550	0.96[ASN][1000 genomes]
rs2280322	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280323	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280324	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4691201	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58288308	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828294	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846466	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666366	0.94[ASN][1000 genomes]
rs7677837	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677998	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7692951	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7697955	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166396400-166425400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:166397600-166427600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:166397600-166428200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:166398000-166427000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166399200-166424600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:166403600-166424800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:166403800-166423200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:166406200-166424000	Weak transcription	Left Ventricle	heart
9	chr4:166409600-166423400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:166409600-166428200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:166411400-166423200	Weak transcription	Hela-S3	cervix
12	chr4:166414200-166427000	Weak transcription	Fetal Heart	heart
13	chr4:166415000-166424800	Weak transcription	Ovary	ovary
14	chr4:166415000-166425400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:166415400-166424800	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:166416800-166422400	Weak transcription	HepG2	liver
17	chr4:166418800-166423400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:166420600-166423200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:166420800-166428200	Weak transcription	Brain Substantia Nigra	brain
20	chr4:166420800-166433400	Weak transcription	Brain Germinal Matrix	brain
21	chr4:166421000-166423600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:166421000-166428800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:166421200-166423400	Weak transcription	Adipose Nuclei	Adipose
24	chr4:166421200-166423400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:166421200-166423600	Weak transcription	Pancreas	Pancrea
26	chr4:166421200-166428200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:166421400-166433200	Weak transcription	Fetal Brain Male	brain
28	chr4:166421800-166423400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:166421800-166424600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:166421800-166424800	Weak transcription	Fetal Stomach	stomach
31	chr4:166421800-166428400	Weak transcription	Aorta	Aorta
32	chr4:166421800-166428800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:166422000-166423600	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:166422000-166425200	Weak transcription	Brain Angular Gyrus	brain
35	chr4:166422000-166426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:166422000-166427200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr4:166422000-166433200	Weak transcription	Fetal Brain Female	brain

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