Variant report

Variant	rs7697955
Chromosome Location	chr4:166429892-166429893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1530044	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17046550	0.92[ASN][1000 genomes]
rs2280322	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280323	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280324	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4691201	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58288308	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60132258	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6828294	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6846466	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666366	0.88[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7677837	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677998	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7692951	0.88[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166420800-166433400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:166421400-166433200	Weak transcription	Fetal Brain Male	brain
3	chr4:166422000-166433200	Weak transcription	Fetal Brain Female	brain
4	chr4:166428400-166430400	Weak transcription	Adipose Nuclei	Adipose
5	chr4:166428400-166433400	Weak transcription	Fetal Lung	lung
6	chr4:166428600-166430200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:166428600-166430400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:166429000-166433800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:166429200-166431000	Weak transcription	Fetal Stomach	stomach
10	chr4:166429200-166438000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:166429400-166431600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:166429800-166430800	Weak transcription	NHLF	lung
13	chr4:166429800-166433600	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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