Variant report

Variant	rs6828294
Chromosome Location	chr4:166425765-166425766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166424717..166426500-chr4:166428424..166430670,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1530044	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17046550	0.96[ASN][1000 genomes]
rs2280322	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2280323	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2280324	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4691201	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58288308	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60132258	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846466	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666366	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7677837	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7677998	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7692951	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7697955	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166397600-166427600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:166397600-166428200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:166398000-166427000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:166409600-166428200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:166414200-166427000	Weak transcription	Fetal Heart	heart
6	chr4:166420800-166428200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:166420800-166433400	Weak transcription	Brain Germinal Matrix	brain
8	chr4:166421000-166428800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:166421200-166428200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:166421400-166433200	Weak transcription	Fetal Brain Male	brain
11	chr4:166421800-166428400	Weak transcription	Aorta	Aorta
12	chr4:166421800-166428800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:166422000-166426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:166422000-166427200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:166422000-166433200	Weak transcription	Fetal Brain Female	brain
16	chr4:166423200-166428600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:166423400-166425800	Enhancers	Adipose Nuclei	Adipose
18	chr4:166423800-166427200	Weak transcription	Right Atrium	heart
19	chr4:166424800-166425800	Enhancers	Fetal Stomach	stomach
20	chr4:166425000-166427000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:166425000-166427000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:166425000-166427000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:166425000-166427000	Weak transcription	NHDF-Ad	bronchial
24	chr4:166425200-166427000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:166425200-166428400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:166425400-166425800	Enhancers	Fetal Muscle Leg	muscle
27	chr4:166425600-166426400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:166425600-166427000	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:166425600-166427000	Weak transcription	Hela-S3	cervix
30	chr4:166425600-166427000	Weak transcription	HepG2	liver
31	chr4:166425600-166427000	Weak transcription	NHLF	lung

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