Variant report

Variant	rs60211361
Chromosome Location	chr6:25130852-25130853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11964969	1.00[EUR][1000 genomes]
rs57749803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57987236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58859882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60047246	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60913234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917740	1.00[EUR][1000 genomes]
rs6917980	1.00[EUR][1000 genomes]
rs6918166	1.00[EUR][1000 genomes]
rs6918168	1.00[EUR][1000 genomes]
rs6918864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461107	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv470806	chr6:25082262-25156197	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv462662	chr6:25084718-25165486	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv601166	chr6:25084718-25165486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25103800-25134800	Weak transcription	Psoas Muscle	Psoas
2	chr6:25104800-25136800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:25110800-25133400	Weak transcription	Aorta	Aorta
4	chr6:25113000-25136800	Weak transcription	Osteobl	bone
5	chr6:25113600-25132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:25116000-25137000	Weak transcription	Lung	lung
7	chr6:25122000-25131600	Strong transcription	Fetal Thymus	thymus
8	chr6:25122600-25132000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:25122600-25133800	Weak transcription	NHDF-Ad	bronchial
10	chr6:25122600-25137000	Weak transcription	Colonic Mucosa	Colon
11	chr6:25122600-25137000	Weak transcription	HSMM	muscle
12	chr6:25122800-25137000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:25123600-25136600	Weak transcription	HSMMtube	muscle
14	chr6:25123800-25136800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:25123800-25138400	Weak transcription	Pancreas	Pancrea
16	chr6:25124400-25138200	Weak transcription	Spleen	Spleen
17	chr6:25126200-25133000	Weak transcription	Primary B cells from cord blood	blood
18	chr6:25126200-25133200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:25126200-25136400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:25126400-25131000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:25126400-25132000	Weak transcription	GM12878-XiMat	blood
22	chr6:25126400-25133200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:25126400-25133400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:25126400-25135400	Weak transcription	Thymus	Thymus
25	chr6:25126400-25136800	Weak transcription	Liver	Liver
26	chr6:25128200-25132800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:25128200-25135000	Weak transcription	Placenta	Placenta
28	chr6:25128400-25135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:25128600-25134400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:25129000-25133200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:25129000-25133800	Weak transcription	Left Ventricle	heart
32	chr6:25129000-25133800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:25129400-25132000	Strong transcription	Dnd41	blood
34	chr6:25129400-25133000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:25129400-25133800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:25129400-25136400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:25129600-25131200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:25129600-25132600	Weak transcription	Primary T cells from cord blood	blood
39	chr6:25129600-25133400	Weak transcription	Right Atrium	heart
40	chr6:25129600-25136800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:25129800-25135400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:25130000-25131400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr6:25130200-25131200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:25130400-25131400	Enhancers	Primary hematopoietic stem cells	blood
45	chr6:25130400-25131800	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr6:25130400-25131800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:25130400-25132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:25130400-25133000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:25130600-25131000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:25130600-25131000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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