Variant report

Variant	rs11964969
Chromosome Location	chr6:25063086-25063087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25060649..25063407-chr6:25066068..25067636,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs4568441	0.86[AMR][1000 genomes]
rs57749803	1.00[EUR][1000 genomes]
rs57987236	1.00[EUR][1000 genomes]
rs58859882	1.00[EUR][1000 genomes]
rs60047246	1.00[EUR][1000 genomes]
rs60211361	1.00[EUR][1000 genomes]
rs60913234	1.00[EUR][1000 genomes]
rs6917740	1.00[EUR][1000 genomes]
rs6917980	1.00[EUR][1000 genomes]
rs6918166	1.00[EUR][1000 genomes]
rs6918168	1.00[EUR][1000 genomes]
rs6918864	1.00[EUR][1000 genomes]
rs73384199	1.00[EUR][1000 genomes]
rs73384200	1.00[EUR][1000 genomes]
rs73386205	1.00[EUR][1000 genomes]
rs73386241	1.00[EUR][1000 genomes]
rs73386277	1.00[EUR][1000 genomes]
rs73731429	1.00[EUR][1000 genomes]
rs73731434	1.00[EUR][1000 genomes]
rs9461107	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25055400-25064200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:25057600-25080400	Weak transcription	Thymus	Thymus
3	chr6:25061200-25063200	Enhancers	NHDF-Ad	bronchial
4	chr6:25061200-25065200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:25061400-25063200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:25061400-25063200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:25061400-25063200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:25061400-25063200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:25061400-25063200	Enhancers	Fetal Muscle Leg	muscle
10	chr6:25061400-25063400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:25061400-25063600	Enhancers	Fetal Heart	heart
12	chr6:25061400-25065000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:25061600-25063200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:25061600-25063200	Enhancers	Ovary	ovary
15	chr6:25061800-25063200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:25061800-25063200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:25061800-25066000	Weak transcription	HSMMtube	muscle
18	chr6:25062200-25063800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:25062400-25063400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:25062800-25063200	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:25062800-25063200	Enhancers	Placenta	Placenta
22	chr6:25062800-25064200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:25062800-25064200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:25062800-25064200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:25062800-25064200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:25063000-25063200	Enhancers	Left Ventricle	heart
27	chr6:25063000-25064200	Weak transcription	Osteobl	bone
28	chr6:25063000-25066600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:25063000-25069000	Weak transcription	Adipose Nuclei	Adipose
30	chr6:25063000-25070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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