Variant report

Variant	rs73731429
Chromosome Location	chr6:24900026-24900027
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24898963..24900824-chr6:24901479..24903899,3	K562	blood:
2	chr6:24898963..24900824-chr6:24901479..24903899,2	K562	blood:
3	chr6:24895200..24897820-chr6:24899260..24901448,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11964969	1.00[EUR][1000 genomes]
rs6917740	1.00[EUR][1000 genomes]
rs6917980	1.00[EUR][1000 genomes]
rs6918166	1.00[EUR][1000 genomes]
rs6918168	1.00[EUR][1000 genomes]
rs6918864	1.00[EUR][1000 genomes]
rs73384199	1.00[EUR][1000 genomes]
rs73384200	1.00[EUR][1000 genomes]
rs73729058	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73731434	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24876000-24901800	Weak transcription	Spleen	Spleen
2	chr6:24882400-24904000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:24884000-24908200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:24890600-24900800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:24891000-24902800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:24891600-24901400	Weak transcription	GM12878-XiMat	blood
7	chr6:24891600-24901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:24891600-24908400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:24892000-24900200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:24896400-24902600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:24896400-24908600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr6:24897400-24901200	Enhancers	Fetal Brain Male	brain
13	chr6:24897400-24901400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:24897400-24903800	Genic enhancers	Primary B cells from cord blood	blood
15	chr6:24897400-24904800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:24897400-24907600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:24897400-24909600	Genic enhancers	Primary B cells from peripheral blood	blood
18	chr6:24897800-24901400	Weak transcription	HSMM	muscle
19	chr6:24898000-24900400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:24898400-24903800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:24898600-24900400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:24898600-24901800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:24898800-24900600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:24898800-24904200	Enhancers	NHDF-Ad	bronchial
25	chr6:24899000-24900400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:24899000-24904400	Weak transcription	Stomach Mucosa	stomach
27	chr6:24899000-24908200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:24899200-24900200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:24899200-24900400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr6:24899200-24900400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:24899200-24900400	Genic enhancers	Primary hematopoietic stem cells	blood
32	chr6:24899200-24902400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
33	chr6:24899200-24902800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:24899400-24901200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr6:24899400-24902000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr6:24899600-24900200	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:24899600-24900200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:24899600-24900200	Enhancers	Fetal Brain Female	brain
39	chr6:24899600-24900400	Enhancers	Brain Cingulate Gyrus	brain
40	chr6:24899600-24900600	Enhancers	Brain Hippocampus Middle	brain
41	chr6:24899600-24900600	Enhancers	HSMMtube	muscle
42	chr6:24899800-24900200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:24899800-24900400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:24899800-24900400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:24899800-24900400	Enhancers	Thymus	Thymus
46	chr6:24899800-24900600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
47	chr6:24899800-24900600	Enhancers	Fetal Heart	heart
48	chr6:24899800-24901000	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr6:24899800-24901800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:24899800-24902000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links