Variant report

Variant	rs73731434
Chromosome Location	chr6:24912117-24912118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr6:24912000-24912315	GM12878	blood:	n/a	n/a
2	MAZ	chr6:24910821-24912173	IMR90	lung:	n/a	n/a
3	REST	chr6:24909191-24912447	H1-neurons	neurons:	n/a	chr6:24910158-24910168 chr6:24910153-24910166 chr6:24910150-24910170

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24904971..24907237-chr6:24911875..24914171,2	K562	blood:

Variant related genes	Relation type
FAM65B	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11964969	1.00[EUR][1000 genomes]
rs57749803	1.00[EUR][1000 genomes]
rs58859882	1.00[EUR][1000 genomes]
rs6917740	1.00[EUR][1000 genomes]
rs6917980	1.00[EUR][1000 genomes]
rs6918166	1.00[EUR][1000 genomes]
rs6918168	1.00[EUR][1000 genomes]
rs6918864	1.00[EUR][1000 genomes]
rs73384199	1.00[EUR][1000 genomes]
rs73384200	1.00[EUR][1000 genomes]
rs73386205	1.00[EUR][1000 genomes]
rs73729058	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73731429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24908000-24912200	Active TSS	HSMMtube	muscle
2	chr6:24908200-24912600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:24908600-24913200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
4	chr6:24908600-24913600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
5	chr6:24909000-24913400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
6	chr6:24909200-24912200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:24909600-24912400	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:24909600-24912400	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:24909600-24913600	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
10	chr6:24909600-24913600	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
11	chr6:24909600-24914200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
12	chr6:24909600-24918000	Weak transcription	Dnd41	blood
13	chr6:24909800-24912600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:24910200-24912200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:24910400-24912200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:24910400-24912400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:24910400-24913000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:24911200-24912200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
19	chr6:24911600-24912200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
20	chr6:24911600-24912200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr6:24911600-24912200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr6:24911600-24912200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:24911600-24912200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
24	chr6:24911600-24912200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:24911600-24912200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:24911600-24912200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:24911600-24912200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
28	chr6:24911600-24912200	Flanking Active TSS	Fetal Thymus	thymus
29	chr6:24911600-24912200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:24911600-24912400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:24911600-24912400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:24911600-24912400	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr6:24911600-24912400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:24911600-24912400	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr6:24911600-24912400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr6:24911600-24912400	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr6:24911600-24912600	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
38	chr6:24911600-24912800	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
39	chr6:24911600-24913400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
40	chr6:24911800-24912200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
41	chr6:24911800-24912200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
42	chr6:24911800-24912200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
43	chr6:24911800-24912200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
44	chr6:24911800-24912200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:24911800-24912200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr6:24911800-24912200	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
47	chr6:24911800-24912200	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr6:24911800-24912200	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr6:24911800-24912200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
50	chr6:24911800-24912200	Bivalent Enhancer	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links