Variant report
| Variant | rs60267869 |
|---|---|
| Chromosome Location | chr3:138978055-138978056 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:138939169..138941125-chr3:138976594..138979201,2 | MCF-7 | breast: | |
| 2 | chr3:138978048..138980422-chr3:138985255..138986781,2 | K562 | blood: | |
| 3 | chr3:138972220..138975029-chr3:138977276..138980675,3 | MCF-7 | breast: | |
| 4 | chr3:138963876..138966393-chr3:138976343..138978891,2 | MCF-7 | breast: | |
| 5 | chr3:138975901..138977496-chr3:138977709..138980522,2 | K562 | blood: | |
| 6 | chr3:138977971..138979750-chr3:138999582..139001642,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000175110 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12629284 | 1.00[EUR][1000 genomes] |
| rs12629323 | 1.00[EUR][1000 genomes] |
| rs12630019 | 1.00[EUR][1000 genomes] |
| rs12631107 | 1.00[EUR][1000 genomes] |
| rs12636067 | 0.97[ASN][1000 genomes] |
| rs12637329 | 1.00[EUR][1000 genomes] |
| rs12638210 | 0.97[ASN][1000 genomes] |
| rs12638754 | 1.00[EUR][1000 genomes] |
| rs12639299 | 1.00[EUR][1000 genomes] |
| rs3924104 | 1.00[EUR][1000 genomes] |
| rs3924105 | 1.00[EUR][1000 genomes] |
| rs56970184 | 1.00[EUR][1000 genomes] |
| rs57178067 | 1.00[EUR][1000 genomes] |
| rs57418856 | 0.94[ASN][1000 genomes] |
| rs57625996 | 1.00[EUR][1000 genomes] |
| rs58428396 | 1.00[ASN][1000 genomes] |
| rs58710050 | 1.00[EUR][1000 genomes] |
| rs59021503 | 1.00[EUR][1000 genomes] |
| rs59401145 | 1.00[EUR][1000 genomes] |
| rs61182055 | 1.00[EUR][1000 genomes] |
| rs61262534 | 1.00[EUR][1000 genomes] |
| rs61379731 | 1.00[EUR][1000 genomes] |
| rs7623554 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005167 | chr3:138854490-138988546 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv536728 | chr3:138854490-138988546 | Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:138978000-138978200 | Enhancers | Ovary | ovary |
| 2 | chr3:138978000-138978200 | Enhancers | Right Ventricle | heart |
