Variant report

Variant	rs59401145
Chromosome Location	chr3:138976890-138976891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138974465..138977038-chr3:138981306..138983813,2	K562	blood:
2	chr3:138975901..138977496-chr3:138977709..138980522,2	K562	blood:
3	chr3:138939169..138941125-chr3:138976594..138979201,2	MCF-7	breast:
4	chr3:138963876..138966393-chr3:138976343..138978891,2	MCF-7	breast:
5	chr3:138968454..138970679-chr3:138975620..138978024,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11712639	0.83[ASN][1000 genomes]
rs12629284	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12629323	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12630019	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12630565	0.93[ASN][1000 genomes]
rs12631107	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632544	0.94[ASN][1000 genomes]
rs12635153	0.82[ASN][1000 genomes]
rs12637124	0.91[ASN][1000 genomes]
rs12637297	0.93[ASN][1000 genomes]
rs12637329	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637397	0.94[ASN][1000 genomes]
rs12637601	0.94[ASN][1000 genomes]
rs12638754	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639039	0.82[ASN][1000 genomes]
rs12639299	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639501	0.96[ASN][1000 genomes]
rs3924104	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924105	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56947740	0.93[ASN][1000 genomes]
rs56970184	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57178067	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57625996	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58210016	0.96[ASN][1000 genomes]
rs58316570	0.82[ASN][1000 genomes]
rs58710050	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59021503	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59690210	0.81[ASN][1000 genomes]
rs60267869	1.00[EUR][1000 genomes]
rs61182055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61262534	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61379731	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73868516	0.82[ASN][1000 genomes]
rs73868517	0.82[ASN][1000 genomes]
rs73868523	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138973800-138978000	Weak transcription	Ovary	ovary

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