Variant report

Variant	rs12632544
Chromosome Location	chr3:138946868-138946869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138946432..138948702-chr3:139036353..139038366,2	K562	blood:
2	chr3:138943440..138945169-chr3:138946867..138949658,2	MCF-7	breast:
3	chr3:138941568..138947245-chr3:138948597..138953877,8	K562	blood:
4	chr3:138944830..138948093-chr3:138950393..138952787,3	K562	blood:
5	chr3:138655102..138656710-chr3:138945646..138947395,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11719376	0.82[ASN][1000 genomes]
rs12629284	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12629323	0.98[ASN][1000 genomes]
rs12630019	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12630565	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12631107	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12633011	0.82[ASN][1000 genomes]
rs12635153	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12637124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637297	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637329	0.98[ASN][1000 genomes]
rs12637397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638754	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12639039	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12639299	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12639501	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924104	0.94[ASN][1000 genomes]
rs3924105	0.94[ASN][1000 genomes]
rs56947740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56970184	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57178067	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57625996	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58210016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58316570	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58710050	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59021503	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59401145	0.94[ASN][1000 genomes]
rs59690210	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61182055	0.94[ASN][1000 genomes]
rs61262534	0.93[ASN][1000 genomes]
rs61379731	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73868516	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73868517	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73868523	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138941800-138950600	Weak transcription	K562	blood
2	chr3:138943400-138948200	Enhancers	Ovary	ovary
3	chr3:138944000-138947600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:138944200-138947000	Enhancers	Pancreas	Pancrea
5	chr3:138944400-138947000	Enhancers	Left Ventricle	heart
6	chr3:138944800-138948800	Weak transcription	NHDF-Ad	bronchial
7	chr3:138945200-138947400	Enhancers	Liver	Liver
8	chr3:138945200-138947400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:138945400-138947000	Enhancers	Fetal Stomach	stomach
10	chr3:138945400-138947600	Enhancers	Colon Smooth Muscle	Colon
11	chr3:138945600-138947000	Enhancers	Right Ventricle	heart
12	chr3:138946200-138947000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:138946600-138947000	Enhancers	Fetal Thymus	thymus
14	chr3:138946600-138947000	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:138946800-138947200	Bivalent Enhancer	HepG2	liver

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