Variant report

Variant	rs12630565
Chromosome Location	chr3:138938891-138938892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138931118..138932695-chr3:138937927..138940520,2	MCF-7	breast:
2	chr3:138937350..138939627-chr3:138942237..138943921,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11719376	0.81[ASN][1000 genomes]
rs12629284	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12629323	0.97[ASN][1000 genomes]
rs12630019	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12631107	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12632544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12633011	0.83[ASN][1000 genomes]
rs12635153	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12637124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12637297	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637329	0.97[ASN][1000 genomes]
rs12637397	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637601	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12638754	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12639039	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12639299	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12639501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3924104	0.93[ASN][1000 genomes]
rs3924105	0.93[ASN][1000 genomes]
rs56947740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56970184	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57178067	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57625996	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58210016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58316570	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58710050	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59021503	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59401145	0.93[ASN][1000 genomes]
rs59690210	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61182055	0.93[ASN][1000 genomes]
rs61262534	0.93[ASN][1000 genomes]
rs61379731	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73868516	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73868517	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73868523	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138936800-138944200	Weak transcription	Pancreas	Pancrea
2	chr3:138937000-138939600	Weak transcription	K562	blood
3	chr3:138937200-138939000	Weak transcription	Ovary	ovary
4	chr3:138938000-138944000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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