Variant report

Variant	rs3924104
Chromosome Location	chr3:138972407-138972408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138972220..138975029-chr3:138977276..138980675,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11712639	0.83[ASN][1000 genomes]
rs12495482	0.82[AMR][1000 genomes]
rs12629284	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12629323	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12630019	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12630565	0.93[ASN][1000 genomes]
rs12631107	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632544	0.94[ASN][1000 genomes]
rs12635153	0.82[ASN][1000 genomes]
rs12637124	0.91[ASN][1000 genomes]
rs12637297	0.93[ASN][1000 genomes]
rs12637329	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637397	0.94[ASN][1000 genomes]
rs12637601	0.94[ASN][1000 genomes]
rs12638754	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639039	0.82[ASN][1000 genomes]
rs12639299	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639501	0.96[ASN][1000 genomes]
rs3924105	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56947740	0.93[ASN][1000 genomes]
rs56970184	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57178067	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57625996	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58210016	0.96[ASN][1000 genomes]
rs58316570	0.82[ASN][1000 genomes]
rs58710050	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59021503	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59401145	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59690210	0.81[ASN][1000 genomes]
rs60267869	1.00[EUR][1000 genomes]
rs61182055	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61262534	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61379731	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73868516	0.82[ASN][1000 genomes]
rs73868517	0.82[ASN][1000 genomes]
rs73868523	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138970800-138973800	Enhancers	Ovary	ovary

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