Variant report

Variant	rs12639501
Chromosome Location	chr3:138958428-138958429
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138853618..138855657-chr3:138955881..138958627,2	K562	blood:
2	chr3:138955798..138958557-chr3:138959270..138961821,3	K562	blood:
3	chr3:138956947..138959449-chr3:138965975..138968805,2	K562	blood:
4	chr3:138956360..138959090-chr3:138963409..138965265,3	K562	blood:
5	chr3:138957472..138959168-chr3:139040158..139041899,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11719376	0.84[ASN][1000 genomes]
rs12629284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12629323	1.00[ASN][1000 genomes]
rs12630019	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12630565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12631107	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12632544	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12633011	0.80[ASN][1000 genomes]
rs12635153	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12637124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12637297	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637329	1.00[ASN][1000 genomes]
rs12637397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12637601	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12638754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12639039	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12639299	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3924104	0.96[ASN][1000 genomes]
rs3924105	0.96[ASN][1000 genomes]
rs56947740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56970184	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57178067	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57625996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58210016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58316570	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58710050	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59021503	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59401145	0.96[ASN][1000 genomes]
rs59690210	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61182055	0.96[ASN][1000 genomes]
rs61262534	0.95[ASN][1000 genomes]
rs61379731	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73868516	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73868517	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73868523	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138957200-138959000	Active TSS	Ovary	ovary
2	chr3:138958400-138958600	Flanking Active TSS	NHDF-Ad	bronchial

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