Variant report

Variant	rs11719376
Chromosome Location	chr3:138965403-138965404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138963876..138966393-chr3:138976343..138978891,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10804664	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11712639	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11924028	0.83[EUR][1000 genomes]
rs12629284	0.84[ASN][1000 genomes]
rs12629323	0.84[ASN][1000 genomes]
rs12630019	0.84[ASN][1000 genomes]
rs12630565	0.81[ASN][1000 genomes]
rs12631107	0.84[ASN][1000 genomes]
rs12632544	0.82[ASN][1000 genomes]
rs12633011	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637297	0.81[ASN][1000 genomes]
rs12637329	0.84[ASN][1000 genomes]
rs12637397	0.82[ASN][1000 genomes]
rs12637601	0.82[ASN][1000 genomes]
rs12638754	0.84[ASN][1000 genomes]
rs12639299	0.84[ASN][1000 genomes]
rs12639501	0.84[ASN][1000 genomes]
rs13069303	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13074105	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13096665	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13097854	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17314607	0.83[EUR][1000 genomes]
rs4276214	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4521258	0.83[EUR][1000 genomes]
rs4894398	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4894399	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4894402	0.86[EUR][1000 genomes]
rs56947740	0.81[ASN][1000 genomes]
rs56970184	0.84[ASN][1000 genomes]
rs57178067	0.84[ASN][1000 genomes]
rs57625996	0.84[ASN][1000 genomes]
rs58210016	0.84[ASN][1000 genomes]
rs58710050	0.84[ASN][1000 genomes]
rs59021503	0.84[ASN][1000 genomes]
rs61379731	0.84[ASN][1000 genomes]
rs952389	0.83[EUR][1000 genomes]
rs955084	0.83[EUR][1000 genomes]
rs955085	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138964800-138966400	Weak transcription	Ovary	ovary

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