Variant report

Variant	rs4276214
Chromosome Location	chr3:138972283-138972284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138972220..138975029-chr3:138977276..138980675,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10804664	0.83[EUR][1000 genomes]
rs10935306	0.81[ASN][1000 genomes]
rs10935313	0.93[ASN][1000 genomes]
rs11712639	0.97[EUR][1000 genomes]
rs11719376	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11924028	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928890	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12632107	0.81[CEU][hapmap]
rs12633011	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13069247	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13069303	0.83[EUR][1000 genomes]
rs13074105	0.86[EUR][1000 genomes]
rs13074693	0.89[ASN][1000 genomes]
rs13083364	0.81[ASN][1000 genomes]
rs13096665	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13097854	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100625	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17314607	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521258	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894381	0.81[ASN][1000 genomes]
rs4894382	0.81[ASN][1000 genomes]
rs4894397	0.89[ASN][1000 genomes]
rs4894398	0.83[EUR][1000 genomes]
rs4894399	0.83[EUR][1000 genomes]
rs4894402	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623058	0.90[ASN][1000 genomes]
rs7623750	0.81[CEU][hapmap]
rs952389	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955084	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955085	0.83[EUR][1000 genomes]
rs9815885	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138970800-138973800	Enhancers	Ovary	ovary

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