Variant report

Variant	rs10935313
Chromosome Location	chr3:138953489-138953490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11924028	0.93[ASN][1000 genomes]
rs11928890	0.82[ASN][1000 genomes]
rs13069247	0.82[ASN][1000 genomes]
rs13074693	0.82[ASN][1000 genomes]
rs13096665	0.82[ASN][1000 genomes]
rs13097854	0.93[ASN][1000 genomes]
rs13100625	0.86[ASN][1000 genomes]
rs1602632	0.85[AMR][1000 genomes]
rs17314607	0.93[ASN][1000 genomes]
rs4276214	0.93[ASN][1000 genomes]
rs4521258	0.93[ASN][1000 genomes]
rs4894397	0.82[ASN][1000 genomes]
rs4894402	0.93[ASN][1000 genomes]
rs7623058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952389	0.93[ASN][1000 genomes]
rs955084	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138948200-138953600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:138949800-138954800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:138950000-138955200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:138951400-138956000	Weak transcription	K562	blood
5	chr3:138951800-138954200	Enhancers	Fetal Lung	lung
6	chr3:138953000-138955000	Enhancers	NHEK	skin
7	chr3:138953000-138955400	Enhancers	HMEC	breast
8	chr3:138953000-138955600	Enhancers	NHDF-Ad	bronchial
9	chr3:138953200-138957000	Enhancers	Ovary	ovary
10	chr3:138953400-138954200	Enhancers	Esophagus	oesophagus
11	chr3:138953400-138954400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:138953400-138954400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:138953400-138954800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:138953400-138955000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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