Variant report

Variant	rs13100625
Chromosome Location	chr3:138919221-138919222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138917144..138919365-chr3:138920471..138923779,4	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10804664	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10935306	0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10935312	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10935313	0.86[ASN][1000 genomes]
rs11707723	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11719269	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11919258	0.85[ASN][1000 genomes]
rs11919334	0.85[ASN][1000 genomes]
rs11919416	0.85[ASN][1000 genomes]
rs11924028	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11927735	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11928890	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632107	0.84[CEU][hapmap];0.86[AMR][1000 genomes]
rs12632125	0.86[AMR][1000 genomes]
rs12633011	0.85[EUR][1000 genomes]
rs13067012	0.86[AMR][1000 genomes]
rs13068617	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13069247	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13069303	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13074105	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13074693	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13075082	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13079289	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13079437	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13083364	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13086745	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13089589	0.86[AMR][1000 genomes]
rs13096665	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13097708	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13097854	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1554563	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1554565	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17314607	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35781224	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4276214	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4365652	0.86[AMR][1000 genomes]
rs4429660	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4521258	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4894381	0.89[ASN][1000 genomes]
rs4894382	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4894383	0.87[AMR][1000 genomes]
rs4894384	0.86[AMR][1000 genomes]
rs4894397	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4894398	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4894399	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4894402	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56729627	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7426421	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7615670	0.86[AMR][1000 genomes]
rs7623058	0.83[ASN][1000 genomes]
rs7623750	0.84[CEU][hapmap]
rs7637464	0.86[AMR][1000 genomes]
rs7639780	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs952389	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs955084	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs955085	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138916800-138920000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:138917200-138919400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:138917200-138919400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:138917400-138919400	Enhancers	NHDF-Ad	bronchial
5	chr3:138917600-138919400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:138917600-138919400	Enhancers	Liver	Liver
7	chr3:138917600-138919600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:138917600-138920400	Enhancers	Ovary	ovary
9	chr3:138917800-138919400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:138918000-138921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:138918000-138921000	Weak transcription	HSMM	muscle
12	chr3:138918400-138919400	Enhancers	Adipose Nuclei	Adipose
13	chr3:138918600-138919400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr3:138918600-138920800	Weak transcription	GM12878-XiMat	blood
15	chr3:138918600-138921200	Weak transcription	HMEC	breast
16	chr3:138918800-138919800	Weak transcription	Pancreas	Pancrea
17	chr3:138919200-138922000	Enhancers	K562	blood

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