Variant report

Variant	rs4894382
Chromosome Location	chr3:138850799-138850800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138843422..138845393-chr3:138848621..138851312,3	K562	blood:
2	chr3:138847994..138851900-chr3:138852497..138855700,4	K562	blood:
3	chr3:138850568..138852847-chr3:138857740..138859655,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10935306	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935312	0.92[EUR][1000 genomes]
rs11707723	0.92[EUR][1000 genomes]
rs11719269	0.92[EUR][1000 genomes]
rs11919258	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11919334	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11919416	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11924028	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11927735	0.93[EUR][1000 genomes]
rs11928890	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12632107	1.00[EUR][1000 genomes]
rs12632125	0.99[EUR][1000 genomes]
rs13067012	1.00[EUR][1000 genomes]
rs13068617	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13069247	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13074693	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13075082	0.92[EUR][1000 genomes]
rs13079289	0.92[EUR][1000 genomes]
rs13079437	0.92[EUR][1000 genomes]
rs13083364	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086745	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13089589	1.00[EUR][1000 genomes]
rs13097708	0.92[EUR][1000 genomes]
rs13097854	0.81[ASN][1000 genomes]
rs13100625	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1554563	0.92[EUR][1000 genomes]
rs1554565	0.92[EUR][1000 genomes]
rs17314607	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35781224	0.92[EUR][1000 genomes]
rs4276214	0.81[ASN][1000 genomes]
rs4365652	0.97[EUR][1000 genomes]
rs4429660	0.92[EUR][1000 genomes]
rs4521258	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4894381	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894383	1.00[EUR][1000 genomes]
rs4894384	0.98[EUR][1000 genomes]
rs4894397	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4894402	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56729627	0.92[EUR][1000 genomes]
rs7426421	0.91[EUR][1000 genomes]
rs7615670	0.95[EUR][1000 genomes]
rs7623750	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7626912	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7627087	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637464	0.95[EUR][1000 genomes]
rs7639780	0.92[EUR][1000 genomes]
rs952389	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs955084	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138847400-138853000	Weak transcription	HMEC	breast
2	chr3:138849200-138851600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:138849400-138854600	Weak transcription	Pancreas	Pancrea
4	chr3:138850400-138851600	Enhancers	HSMMtube	muscle
5	chr3:138850600-138851200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:138850600-138851200	Enhancers	K562	blood

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