Variant report

Variant	rs11919334
Chromosome Location	chr3:138850541-138850542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138843422..138845393-chr3:138848621..138851312,3	K562	blood:
2	chr3:138847994..138851900-chr3:138852497..138855700,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10935306	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10935312	0.87[EUR][1000 genomes]
rs11707723	0.87[EUR][1000 genomes]
rs11719269	0.87[EUR][1000 genomes]
rs11919258	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919416	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927735	0.88[EUR][1000 genomes]
rs11928890	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632107	0.95[EUR][1000 genomes]
rs12632125	0.94[EUR][1000 genomes]
rs13067012	0.95[EUR][1000 genomes]
rs13068617	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13069247	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13074693	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13075082	0.86[EUR][1000 genomes]
rs13079289	0.87[EUR][1000 genomes]
rs13079437	0.87[EUR][1000 genomes]
rs13083364	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13086745	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089589	0.95[EUR][1000 genomes]
rs13097708	0.87[EUR][1000 genomes]
rs13100625	0.85[ASN][1000 genomes]
rs1554563	0.87[EUR][1000 genomes]
rs1554565	0.87[EUR][1000 genomes]
rs35781224	0.86[EUR][1000 genomes]
rs4365652	0.92[EUR][1000 genomes]
rs4429660	0.87[EUR][1000 genomes]
rs4894381	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4894382	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4894383	0.95[EUR][1000 genomes]
rs4894384	0.93[EUR][1000 genomes]
rs4894397	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56729627	0.87[EUR][1000 genomes]
rs7426421	0.86[EUR][1000 genomes]
rs7615670	0.89[EUR][1000 genomes]
rs7623750	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7626912	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7627087	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7637464	0.89[EUR][1000 genomes]
rs7639780	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138847400-138853000	Weak transcription	HMEC	breast
2	chr3:138848000-138850600	Weak transcription	K562	blood
3	chr3:138849200-138851600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:138849400-138854600	Weak transcription	Pancreas	Pancrea
5	chr3:138850400-138851600	Enhancers	HSMMtube	muscle

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