Variant report

Variant	rs17314607
Chromosome Location	chr3:138921794-138921795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:138663277..138665291-chr3:138920079..138922965,2	K562	blood:
2	chr3:138830591..138831327-chr3:138920891..138921850,5	MCF-7	breast:
3	chr3:138921447..138922242-chr3:139047879..139048473,2	K562	blood:
4	chr3:138920879..138921958-chr3:139047535..139048488,5	MCF-7	breast:
5	chr3:138659826..138661110-chr3:138920916..138922197,6	MCF-7	breast:
6	chr3:138654954..138655571-chr3:138920961..138921828,2	MCF-7	breast:
7	chr3:138917144..138919365-chr3:138920471..138923779,4	K562	blood:
8	chr3:138920304..138922321-chr3:138962433..138964751,2	K562	blood:
9	chr3:138655209..138657640-chr3:138920861..138922707,2	MCF-7	breast:
10	chr3:138660094..138660757-chr3:138920977..138921829,3	MCF-7	breast:

No data

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10804664	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10935306	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10935312	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10935313	0.93[ASN][1000 genomes]
rs11707723	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11712639	0.84[EUR][1000 genomes]
rs11719269	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11719376	0.83[EUR][1000 genomes]
rs11924028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927735	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11928890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12632107	0.88[CEU][hapmap];0.86[AMR][1000 genomes]
rs12632125	0.86[AMR][1000 genomes]
rs12633011	0.89[EUR][1000 genomes]
rs13067012	0.86[AMR][1000 genomes]
rs13068617	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13069247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13069303	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13074105	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13074693	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075082	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13079289	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13079437	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13083364	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13086745	0.89[AMR][1000 genomes]
rs13089589	0.86[AMR][1000 genomes]
rs13096665	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13097708	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13097854	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100625	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1554563	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1554565	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35781224	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4276214	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365652	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4429660	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4521258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894381	0.81[ASN][1000 genomes]
rs4894382	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4894383	0.87[AMR][1000 genomes]
rs4894384	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4894397	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4894398	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4894399	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4894402	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56729627	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7426421	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7615670	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7623058	0.90[ASN][1000 genomes]
rs7623750	0.88[CEU][hapmap]
rs7637464	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7639780	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs952389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955085	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9815885	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138919200-138922000	Enhancers	K562	blood
2	chr3:138919400-138923400	Weak transcription	NHDF-Ad	bronchial
3	chr3:138919800-138921800	Enhancers	Pancreas	Pancrea
4	chr3:138920400-138923400	Weak transcription	Ovary	ovary
5	chr3:138920800-138921800	Enhancers	GM12878-XiMat	blood
6	chr3:138921000-138921800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:138921000-138921800	Enhancers	Fetal Muscle Leg	muscle
8	chr3:138921000-138921800	Enhancers	HSMM	muscle
9	chr3:138921200-138921800	Enhancers	HMEC	breast
10	chr3:138921600-138921800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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