Variant report

Variant	rs9815885
Chromosome Location	chr3:138977795-138977796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11924028	0.81[ASN][1000 genomes]
rs13096665	0.81[AFR][1000 genomes]
rs13097854	0.81[ASN][1000 genomes]
rs17314607	0.81[ASN][1000 genomes]
rs4276214	0.81[ASN][1000 genomes]
rs4521258	0.81[ASN][1000 genomes]
rs4894402	0.81[ASN][1000 genomes]
rs952389	0.81[ASN][1000 genomes]
rs955084	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138973800-138978000	Weak transcription	Ovary	ovary
2	chr3:138977000-138977800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:138977000-138978000	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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