Variant report

Variant	rs13097854
Chromosome Location	chr3:138936844-138936845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138935193..138937011-chr3:138939160..138941395,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10804664	0.89[EUR][1000 genomes]
rs10935306	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10935313	0.93[ASN][1000 genomes]
rs11712639	0.93[EUR][1000 genomes]
rs11719376	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11924028	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928890	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12633011	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13068617	0.85[AMR][1000 genomes]
rs13069247	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13069303	0.89[EUR][1000 genomes]
rs13074105	0.91[EUR][1000 genomes]
rs13074693	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13083364	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13096665	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13100625	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17314607	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276214	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521258	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894381	0.81[ASN][1000 genomes]
rs4894382	0.81[ASN][1000 genomes]
rs4894397	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4894398	0.89[EUR][1000 genomes]
rs4894399	0.89[EUR][1000 genomes]
rs4894402	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623058	0.90[ASN][1000 genomes]
rs952389	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955084	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955085	0.89[EUR][1000 genomes]
rs9815885	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138936000-138937400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:138936200-138937000	Enhancers	K562	blood
3	chr3:138936200-138937200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:138936200-138937200	Enhancers	Ovary	ovary
5	chr3:138936200-138937400	Enhancers	HMEC	breast
6	chr3:138936600-138937200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:138936800-138944200	Weak transcription	Pancreas	Pancrea

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