Variant report

Variant	rs13069303
Chromosome Location	chr3:138920886-138920887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138663277..138665291-chr3:138920079..138922965,2	K562	blood:
2	chr3:138919443..138921426-chr3:139032883..139034956,2	K562	blood:
3	chr3:138830459..138831302-chr3:138920846..138921696,3	MCF-7	breast:
4	chr3:138920879..138921958-chr3:139047535..139048488,5	MCF-7	breast:
5	chr3:138917144..138919365-chr3:138920471..138923779,4	K562	blood:
6	chr3:138920304..138922321-chr3:138962433..138964751,2	K562	blood:
7	chr3:138655209..138657640-chr3:138920861..138922707,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10804664	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935306	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10935312	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11707723	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11712639	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11719269	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11719376	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11924028	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11927735	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11928890	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12632107	0.88[CEU][hapmap];0.86[AMR][1000 genomes]
rs12632125	0.86[AMR][1000 genomes]
rs12633011	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12635153	0.83[ASN][1000 genomes]
rs12639039	0.83[ASN][1000 genomes]
rs13067012	0.86[AMR][1000 genomes]
rs13068617	0.85[AMR][1000 genomes]
rs13069247	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13074105	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074693	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13075082	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13079289	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13079437	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13083364	0.85[AMR][1000 genomes]
rs13086745	0.80[AMR][1000 genomes]
rs13089589	0.86[AMR][1000 genomes]
rs13096665	0.83[EUR][1000 genomes]
rs13097708	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13097854	0.89[EUR][1000 genomes]
rs13100625	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1554563	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1554565	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17314607	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35781224	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4276214	0.83[EUR][1000 genomes]
rs4365652	0.86[AMR][1000 genomes]
rs4429660	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4521258	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4894383	0.87[AMR][1000 genomes]
rs4894384	0.86[AMR][1000 genomes]
rs4894397	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4894398	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894399	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894402	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56729627	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58316570	0.83[ASN][1000 genomes]
rs59690210	0.82[ASN][1000 genomes]
rs73868516	0.83[ASN][1000 genomes]
rs73868517	0.83[ASN][1000 genomes]
rs73868523	0.83[ASN][1000 genomes]
rs7426421	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7615670	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7623750	0.88[CEU][hapmap]
rs7637464	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7639780	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs952389	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs955084	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs955085	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138918000-138921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:138918000-138921000	Weak transcription	HSMM	muscle
3	chr3:138918600-138921200	Weak transcription	HMEC	breast
4	chr3:138919200-138922000	Enhancers	K562	blood
5	chr3:138919400-138923400	Weak transcription	NHDF-Ad	bronchial
6	chr3:138919600-138921000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:138919800-138921800	Enhancers	Pancreas	Pancrea
8	chr3:138920400-138923400	Weak transcription	Ovary	ovary
9	chr3:138920600-138921200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:138920800-138921200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:138920800-138921200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:138920800-138921400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:138920800-138921600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:138920800-138921800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links