Variant report

Variant	rs73868523
Chromosome Location	chr3:138935722-138935723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138935193..138937011-chr3:138939160..138941395,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10804664	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12629284	0.86[ASN][1000 genomes]
rs12629323	0.86[ASN][1000 genomes]
rs12630019	0.86[ASN][1000 genomes]
rs12630565	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12631107	0.86[ASN][1000 genomes]
rs12632544	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12635153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637124	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12637297	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12637329	0.86[ASN][1000 genomes]
rs12637397	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12637601	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12638754	0.86[ASN][1000 genomes]
rs12639039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639299	0.86[ASN][1000 genomes]
rs12639501	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13069303	0.83[ASN][1000 genomes]
rs13074105	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3924104	0.82[ASN][1000 genomes]
rs3924105	0.82[ASN][1000 genomes]
rs4894398	0.83[ASN][1000 genomes]
rs4894399	0.83[ASN][1000 genomes]
rs56947740	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56970184	0.86[ASN][1000 genomes]
rs57178067	0.86[ASN][1000 genomes]
rs57625996	0.86[ASN][1000 genomes]
rs58210016	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58316570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58710050	0.86[ASN][1000 genomes]
rs59021503	0.86[ASN][1000 genomes]
rs59401145	0.82[ASN][1000 genomes]
rs59690210	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61182055	0.82[ASN][1000 genomes]
rs61262534	0.81[ASN][1000 genomes]
rs61379731	0.86[ASN][1000 genomes]
rs73868516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73868517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955085	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138928200-138936200	Weak transcription	K562	blood
2	chr3:138933400-138936200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:138934600-138936200	Weak transcription	Ovary	ovary
4	chr3:138935600-138936000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links