Variant report

Variant	rs12637297
Chromosome Location	chr3:138955466-138955467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138941747..138943879-chr3:138954779..138956623,2	K562	blood:
2	chr3:138954298..138956086-chr3:138966985..138968712,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11719376	0.81[ASN][1000 genomes]
rs12629284	0.97[ASN][1000 genomes]
rs12629323	0.97[ASN][1000 genomes]
rs12630019	0.97[ASN][1000 genomes]
rs12630565	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12631107	0.97[ASN][1000 genomes]
rs12632544	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12635153	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12637124	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12637329	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12637397	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637601	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638754	0.97[ASN][1000 genomes]
rs12639039	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12639299	0.97[ASN][1000 genomes]
rs12639501	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3924104	0.93[ASN][1000 genomes]
rs3924105	0.93[ASN][1000 genomes]
rs56947740	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56970184	0.97[ASN][1000 genomes]
rs57178067	0.97[ASN][1000 genomes]
rs57625996	0.97[ASN][1000 genomes]
rs58210016	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58316570	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58710050	0.97[ASN][1000 genomes]
rs59021503	0.97[ASN][1000 genomes]
rs59401145	0.93[ASN][1000 genomes]
rs59690210	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61182055	0.93[ASN][1000 genomes]
rs61262534	0.92[ASN][1000 genomes]
rs61379731	0.97[ASN][1000 genomes]
rs73868516	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73868517	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73868523	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138951400-138956000	Weak transcription	K562	blood
2	chr3:138953000-138955600	Enhancers	NHDF-Ad	bronchial
3	chr3:138953200-138957000	Enhancers	Ovary	ovary
4	chr3:138955000-138955600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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