Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:138972800..138975345-chr3:138978685..138981269,2	K562	blood:
2	chr3:138972220..138975029-chr3:138977276..138980675,3	MCF-7	breast:
3	chr3:138966028..138968084-chr3:138972408..138975261,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf72-7	chr3:138972837-138973666	l_2483_chr3:138972836-138979311_testes

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10804664	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11719376	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11924028	0.84[EUR][1000 genomes]
rs12632107	0.81[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs12633011	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13069303	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13074105	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13096665	0.97[EUR][1000 genomes]
rs13097854	0.93[EUR][1000 genomes]
rs17314607	0.84[EUR][1000 genomes]
rs3924104	0.83[ASN][1000 genomes]
rs3924105	0.83[ASN][1000 genomes]
rs4276214	0.97[EUR][1000 genomes]
rs4521258	0.84[EUR][1000 genomes]
rs4894398	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4894399	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4894402	0.86[EUR][1000 genomes]
rs59401145	0.83[ASN][1000 genomes]
rs61182055	0.83[ASN][1000 genomes]
rs61262534	0.82[ASN][1000 genomes]
rs7623750	0.81[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs952389	0.84[EUR][1000 genomes]
rs955084	0.84[EUR][1000 genomes]
rs955085	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11712639	RASA2	cis	cerebellum	SCAN
rs11712639	ZBTB38	cis	cerebellum	SCAN
rs11712639	FOXL2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138970800-138973800	Enhancers	Ovary	ovary

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