Variant report

Variant	rs60269067
Chromosome Location	chr11:45423364-45423365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11821470	0.96[AFR][1000 genomes]
rs11823317	0.96[AFR][1000 genomes]
rs11824780	0.88[AFR][1000 genomes]
rs58246347	1.00[AFR][1000 genomes]
rs60592278	0.96[AFR][1000 genomes]
rs61635065	0.96[AFR][1000 genomes]
rs73456042	1.00[AFR][1000 genomes]
rs73456050	0.87[AFR][1000 genomes]
rs73456052	1.00[AFR][1000 genomes]
rs73456055	0.96[AFR][1000 genomes]
rs73456056	0.96[AFR][1000 genomes]
rs73456058	0.96[AFR][1000 genomes]
rs73456061	0.96[AFR][1000 genomes]
rs73456075	0.96[AFR][1000 genomes]
rs73456077	0.96[AFR][1000 genomes]
rs73456094	0.96[AFR][1000 genomes]
rs7934947	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv306	chr11:45414044-45444431	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv1812422	chr11:45419113-45431510	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
2	chr11:45416000-45423400	Weak transcription	Spleen	Spleen
3	chr11:45420200-45423800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:45421000-45423400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:45421800-45431600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45422000-45428200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:45422000-45428800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:45422000-45431600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:45422600-45423800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:45423000-45423800	Enhancers	HSMM	muscle
11	chr11:45423200-45424800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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