Variant report

Variant	rs73456094
Chromosome Location	chr11:45447353-45447354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11821470	1.00[AFR][1000 genomes]
rs11823317	1.00[AFR][1000 genomes]
rs11824780	0.92[AFR][1000 genomes]
rs58246347	0.96[AFR][1000 genomes]
rs60269067	0.96[AFR][1000 genomes]
rs60592278	1.00[AFR][1000 genomes]
rs61635065	1.00[AFR][1000 genomes]
rs73456042	0.96[AFR][1000 genomes]
rs73456050	0.91[AFR][1000 genomes]
rs73456052	0.96[AFR][1000 genomes]
rs73456055	1.00[AFR][1000 genomes]
rs73456056	1.00[AFR][1000 genomes]
rs73456058	1.00[AFR][1000 genomes]
rs73456061	1.00[AFR][1000 genomes]
rs73456075	1.00[AFR][1000 genomes]
rs73456077	1.00[AFR][1000 genomes]
rs7934947	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45436400-45456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45444600-45447800	Enhancers	Fetal Brain Male	brain
3	chr11:45445000-45449600	Weak transcription	Spleen	Spleen
4	chr11:45446600-45447600	Enhancers	Aorta	Aorta
5	chr11:45447200-45447400	Enhancers	Brain Anterior Caudate	brain
6	chr11:45447200-45447800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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