Variant report

Variant	rs73456077
Chromosome Location	chr11:45436568-45436569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11821470	1.00[AFR][1000 genomes]
rs11823317	1.00[AFR][1000 genomes]
rs11824780	0.92[AFR][1000 genomes]
rs58246347	0.96[AFR][1000 genomes]
rs60269067	0.96[AFR][1000 genomes]
rs60592278	1.00[AFR][1000 genomes]
rs61635065	1.00[AFR][1000 genomes]
rs73456042	0.96[AFR][1000 genomes]
rs73456050	0.91[AFR][1000 genomes]
rs73456052	0.96[AFR][1000 genomes]
rs73456055	1.00[AFR][1000 genomes]
rs73456056	1.00[AFR][1000 genomes]
rs73456058	1.00[AFR][1000 genomes]
rs73456061	1.00[AFR][1000 genomes]
rs73456075	1.00[AFR][1000 genomes]
rs73456094	1.00[AFR][1000 genomes]
rs7934947	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv306	chr11:45414044-45444431	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv996050	chr11:45426481-45436633	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv511486	chr11:45429381-45438374	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1807375	chr11:45430401-45438374	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45434200-45444000	Weak transcription	Brain Germinal Matrix	brain
2	chr11:45434600-45436800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:45434600-45436800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:45435800-45436600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:45436400-45436600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:45436400-45436600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:45436400-45436600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:45436400-45436600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:45436400-45438000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:45436400-45456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links