Variant report

Variant	rs60329418
Chromosome Location	chr3:113147824-113147825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113146276..113148962-chr3:113155002..113157279,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SIDT1-1	chr3:113147740-113147908	ENSG00000243849.1

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10934229	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10934230	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10934231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923005	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12233528	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12630518	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12635786	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12636607	0.84[AMR][1000 genomes]
rs12636959	0.80[EUR][1000 genomes]
rs12637924	0.86[EUR][1000 genomes]
rs16860850	0.81[EUR][1000 genomes]
rs16860868	0.81[EUR][1000 genomes]
rs16860899	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2291413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732806	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4682136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682137	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4682485	0.81[EUR][1000 genomes]
rs55667700	0.81[EUR][1000 genomes]
rs55710804	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55748551	0.81[EUR][1000 genomes]
rs55757335	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56339567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62265992	0.81[EUR][1000 genomes]
rs6779002	0.86[AMR][1000 genomes]
rs6779305	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73235059	0.80[EUR][1000 genomes]
rs73235065	0.81[EUR][1000 genomes]
rs73237104	0.86[EUR][1000 genomes]
rs73237110	0.86[EUR][1000 genomes]
rs73237123	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73237130	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73237136	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73237142	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73237143	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73237146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73239107	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73239111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73239117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239120	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73239121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239126	0.86[EUR][1000 genomes]
rs7625933	0.83[AMR][1000 genomes]
rs763805	0.80[EUR][1000 genomes]
rs8179926	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113074400-113184400	Weak transcription	Hela-S3	cervix
2	chr3:113102200-113148800	Weak transcription	Brain Angular Gyrus	brain
3	chr3:113109200-113159800	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:113112200-113148400	Weak transcription	Brain Anterior Caudate	brain
5	chr3:113117600-113148400	Weak transcription	Placenta	Placenta
6	chr3:113134600-113159800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:113135200-113164600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:113136000-113176400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:113137400-113148600	Weak transcription	Small Intestine	intestine
10	chr3:113137400-113160000	Weak transcription	Fetal Stomach	stomach
11	chr3:113140000-113160000	Weak transcription	Psoas Muscle	Psoas
12	chr3:113143600-113148000	Strong transcription	Left Ventricle	heart
13	chr3:113144200-113151400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:113145800-113149000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:113145800-113149800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:113145800-113150200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:113145800-113155800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:113145800-113159400	Weak transcription	Gastric	stomach
19	chr3:113145800-113159400	Weak transcription	HSMMtube	muscle
20	chr3:113145800-113159600	Weak transcription	Lung	lung
21	chr3:113145800-113159800	Weak transcription	Esophagus	oesophagus
22	chr3:113145800-113159800	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:113145800-113159800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:113145800-113159800	Weak transcription	Thymus	Thymus
25	chr3:113145800-113160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:113145800-113160200	Weak transcription	Aorta	Aorta
27	chr3:113145800-113166000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:113145800-113176600	Weak transcription	Spleen	Spleen
29	chr3:113146000-113148200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:113146000-113148400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:113146000-113148400	Weak transcription	Fetal Lung	lung
32	chr3:113146000-113150400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:113146000-113154200	Weak transcription	Fetal Thymus	thymus
34	chr3:113146000-113155400	Weak transcription	Osteobl	bone
35	chr3:113146000-113155800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:113146000-113159800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:113146000-113160000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr3:113146000-113160000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:113146000-113160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr3:113146000-113172000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:113146000-113191000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:113146200-113148200	Weak transcription	Fetal Kidney	kidney
43	chr3:113146200-113148400	Weak transcription	Primary B cells from cord blood	blood
44	chr3:113146200-113153000	Weak transcription	Colonic Mucosa	Colon
45	chr3:113146200-113155400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:113146200-113159600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:113146200-113159600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:113146200-113159600	Weak transcription	Dnd41	blood
49	chr3:113146200-113160000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:113146200-113160000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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