Variant report
| Variant | rs6033105 |
|---|---|
| Chromosome Location | chr20:11298893-11298894 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10048850 | 0.81[EUR][1000 genomes] |
| rs16992379 | 0.89[EUR][1000 genomes] |
| rs16992385 | 0.87[EUR][1000 genomes] |
| rs2092643 | 0.81[EUR][1000 genomes] |
| rs2207102 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2207111 | 0.87[EUR][1000 genomes] |
| rs56880002 | 0.81[EUR][1000 genomes] |
| rs56916303 | 0.81[EUR][1000 genomes] |
| rs57494012 | 0.89[EUR][1000 genomes] |
| rs57530621 | 0.89[EUR][1000 genomes] |
| rs58745127 | 0.84[EUR][1000 genomes] |
| rs60059631 | 0.84[EUR][1000 genomes] |
| rs6033098 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6033115 | 0.89[EUR][1000 genomes] |
| rs6040519 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6040525 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6040535 | 0.89[EUR][1000 genomes] |
| rs6040544 | 0.89[EUR][1000 genomes] |
| rs6040547 | 0.89[EUR][1000 genomes] |
| rs6040549 | 0.89[EUR][1000 genomes] |
| rs6040550 | 0.89[EUR][1000 genomes] |
| rs6040552 | 0.89[EUR][1000 genomes] |
| rs6040560 | 0.84[EUR][1000 genomes] |
| rs60517966 | 0.89[EUR][1000 genomes] |
| rs61045178 | 0.81[EUR][1000 genomes] |
| rs73243915 | 0.87[EUR][1000 genomes] |
| rs73243929 | 0.84[EUR][1000 genomes] |
| rs73243934 | 0.84[EUR][1000 genomes] |
| rs73243975 | 0.84[EUR][1000 genomes] |
| rs73243981 | 0.84[EUR][1000 genomes] |
| rs73244000 | 0.84[EUR][1000 genomes] |
| rs73245616 | 0.81[EUR][1000 genomes] |
| rs73245627 | 0.81[EUR][1000 genomes] |
| rs73261557 | 0.89[EUR][1000 genomes] |
| rs982209 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065969 | chr20:10850562-11464172 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv544181 | chr20:10850562-11464172 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv585415 | chr20:11134907-11383327 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv458869 | chr20:11271614-11306751 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv585417 | chr20:11271614-11306751 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:11297200-11299600 | Weak transcription | Pancreas | Pancrea |
| 2 | chr20:11298800-11305200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
