Variant report

Variant	rs58745127
Chromosome Location	chr20:11337475-11337476
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10048850	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16992379	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16992385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092643	0.97[EUR][1000 genomes]
rs2207102	0.88[EUR][1000 genomes]
rs2207111	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4813983	0.96[ASN][1000 genomes]
rs56880002	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56916303	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57343506	0.88[EUR][1000 genomes]
rs57494012	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57530621	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57628024	0.88[EUR][1000 genomes]
rs60059631	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6033098	0.88[EUR][1000 genomes]
rs6033105	0.84[EUR][1000 genomes]
rs6033115	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60399139	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6040519	0.88[EUR][1000 genomes]
rs6040525	0.88[EUR][1000 genomes]
rs6040535	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040544	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040547	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040549	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040550	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040552	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60517966	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61045178	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6108901	0.96[ASN][1000 genomes]
rs6108902	0.96[ASN][1000 genomes]
rs61252470	0.96[ASN][1000 genomes]
rs73243915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73243929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73243934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73243975	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73243981	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73244000	1.00[EUR][1000 genomes]
rs73245616	0.97[EUR][1000 genomes]
rs73245627	0.97[EUR][1000 genomes]
rs73261557	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982209	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11331000-11338400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr20:11335000-11355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11335400-11338200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:11337400-11338000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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