Variant report

Variant	rs6108902
Chromosome Location	chr20:11277139-11277140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10048850	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11087021	0.81[AFR][1000 genomes]
rs16992379	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16992385	0.96[ASN][1000 genomes]
rs2207102	0.88[EUR][1000 genomes]
rs2207111	1.00[CEU][hapmap];0.96[ASN][1000 genomes]
rs4813983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56880002	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56916303	0.96[ASN][1000 genomes]
rs57494012	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57530621	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57628024	0.87[EUR][1000 genomes]
rs58745127	0.96[ASN][1000 genomes]
rs6033098	0.88[EUR][1000 genomes]
rs6033115	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040519	0.88[EUR][1000 genomes]
rs6040525	0.88[EUR][1000 genomes]
rs6040535	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040544	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040547	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040549	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040550	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040552	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040560	0.96[ASN][1000 genomes]
rs60517966	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61045178	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6108901	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61252470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6134174	0.84[AFR][1000 genomes]
rs73243915	0.96[ASN][1000 genomes]
rs73243929	0.96[ASN][1000 genomes]
rs73243934	0.96[ASN][1000 genomes]
rs73261557	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs982209	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv458869	chr20:11271614-11306751	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585417	chr20:11271614-11306751	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11274600-11278000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:11276800-11277600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:11277000-11278200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr20:11277000-11278200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:11277000-11278200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:11277000-11278200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:11277000-11278200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr20:11277000-11278200	Enhancers	HMEC	breast
9	chr20:11277000-11278200	Enhancers	NHEK	skin
10	chr20:11277000-11278400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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