Variant report

Variant	rs6040519
Chromosome Location	chr20:11293050-11293051
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10048850	0.97[EUR][1000 genomes]
rs16992379	0.94[EUR][1000 genomes]
rs16992385	0.91[EUR][1000 genomes]
rs2092643	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2207102	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207111	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4813983	0.88[EUR][1000 genomes]
rs56880002	0.97[EUR][1000 genomes]
rs56916303	0.86[EUR][1000 genomes]
rs57343506	0.82[EUR][1000 genomes]
rs57494012	0.94[EUR][1000 genomes]
rs57530621	0.94[EUR][1000 genomes]
rs57628024	0.82[EUR][1000 genomes]
rs58745127	0.88[EUR][1000 genomes]
rs60059631	0.88[EUR][1000 genomes]
rs6033098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6033105	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6033115	0.94[EUR][1000 genomes]
rs60399139	0.83[EUR][1000 genomes]
rs6040525	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040535	0.94[EUR][1000 genomes]
rs6040544	0.94[EUR][1000 genomes]
rs6040547	0.94[EUR][1000 genomes]
rs6040549	0.94[EUR][1000 genomes]
rs6040550	0.94[EUR][1000 genomes]
rs6040552	0.94[EUR][1000 genomes]
rs6040560	0.88[EUR][1000 genomes]
rs60517966	0.94[EUR][1000 genomes]
rs61045178	0.97[EUR][1000 genomes]
rs6108901	0.88[EUR][1000 genomes]
rs6108902	0.88[EUR][1000 genomes]
rs61252470	0.88[EUR][1000 genomes]
rs73243915	0.91[EUR][1000 genomes]
rs73243929	0.88[EUR][1000 genomes]
rs73243934	0.88[EUR][1000 genomes]
rs73243975	0.88[EUR][1000 genomes]
rs73243981	0.88[EUR][1000 genomes]
rs73244000	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73245616	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73245627	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73261557	0.94[EUR][1000 genomes]
rs982209	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv458869	chr20:11271614-11306751	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585417	chr20:11271614-11306751	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11287000-11298600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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