Variant report
| Variant | rs60336392 |
|---|---|
| Chromosome Location | chr15:51944692-51944693 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:51913792..51916405-chr15:51942869..51945366,3 | K562 | blood: | |
| 2 | chr15:51942270..51945778-chr15:52064444..52070724,6 | MCF-7 | breast: | |
| 3 | chr15:51944344..51944987-chr15:52068324..52069242,2 | K562 | blood: | |
| 4 | chr15:51944446..51946253-chr15:52042557..52044525,2 | K562 | blood: | |
| 5 | chr15:51943708..51945946-chr15:52042057..52044525,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128872 | Chromatin interaction |
| ENSG00000104093 | Chromatin interaction |
| ENSG00000140280 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs16964354 | 1.00[AMR][1000 genomes] |
| rs60326784 | 1.00[AMR][1000 genomes] |
| rs73401459 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73401462 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73401475 | 1.00[AFR][1000 genomes] |
| rs73401479 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73401482 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73401486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73401494 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471243 | chr15:51345485-52018096 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv904219 | chr15:51851999-51977159 | Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
| 3 | nsv457139 | chr15:51854718-51977159 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
| 4 | nsv569407 | chr15:51854718-51977159 | Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
| 5 | nsv569408 | chr15:51867172-51946100 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:51943800-51944800 | Flanking Active TSS | K562 | blood |
