Variant report

Variant	rs73401462
Chromosome Location	chr15:51942328-51942329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51942308..51943114-chr15:52068750..52069400,2	MCF-7	breast:
2	chr15:51942035..51944458-chr15:52068253..52069914,2	K562	blood:
3	chr15:51941765..51942808-chr15:52067729..52069864,21	K562	blood:
4	chr15:51942260..51942806-chr15:52519301..52520236,2	K562	blood:
5	chr15:51941390..51943585-chr15:52073492..52075447,2	K562	blood:
6	chr15:51939565..51943710-chr15:52029015..52031702,3	MCF-7	breast:
7	chr15:51940800..51942364-chr15:52071876..52074244,2	K562	blood:
8	chr15:51933560..51938280-chr15:51939228..51942863,5	MCF-7	breast:
9	chr15:51942270..51945778-chr15:52064444..52070724,6	MCF-7	breast:
10	chr15:51941637..51943668-chr15:52068078..52069917,57	MCF-7	breast:
11	chr15:51942227..51942926-chr15:52019486..52020256,5	MCF-7	breast:
12	chr15:51941829..51942488-chr15:52067554..52068054,2	MCF-7	breast:
13	chr15:51939928..51943794-chr15:52067782..52071460,6	MCF-7	breast:
14	chr15:51940521..51942581-chr15:52121824..52123791,2	MCF-7	breast:
15	chr15:51942145..51943860-chr15:52018594..52020287,2	K562	blood:
16	chr15:51938680..51944458-chr15:52065543..52071230,9	K562	blood:
17	chr15:51941554..51943046-chr15:52068074..52069805,23	MCF-7	breast:
18	chr15:51942152..51942788-chr15:52431755..52432640,2	K562	blood:
19	chr15:51941822..51942724-chr15:52027267..52028353,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000069966	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16964354	1.00[AMR][1000 genomes]
rs60326784	1.00[AMR][1000 genomes]
rs60336392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401475	1.00[AFR][1000 genomes]
rs73401479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401494	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51940000-51943000	Weak transcription	K562	blood
2	chr15:51942000-51942400	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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