Variant report
Variant | rs6033900 |
---|---|
Chromosome Location | chr20:14181863-14181864 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1033860 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1118572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1980702 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs204623 | 1.00[AMR][1000 genomes] |
rs204624 | 1.00[AMR][1000 genomes] |
rs2327828 | 1.00[AMR][1000 genomes] |
rs2423771 | 1.00[AMR][1000 genomes] |
rs2423776 | 1.00[AMR][1000 genomes] |
rs3121496 | 1.00[AMR][1000 genomes] |
rs6033874 | 1.00[AMR][1000 genomes] |
rs6033875 | 1.00[AMR][1000 genomes] |
rs6042465 | 1.00[AMR][1000 genomes] |
rs6042481 | 1.00[AMR][1000 genomes] |
rs6042482 | 1.00[AMR][1000 genomes] |
rs6042504 | 1.00[AMR][1000 genomes] |
rs6042540 | 1.00[AMR][1000 genomes] |
rs6042546 | 1.00[AMR][1000 genomes] |
rs6042587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6079320 | 1.00[AMR][1000 genomes] |
rs6079343 | 1.00[AMR][1000 genomes] |
rs6079347 | 1.00[AMR][1000 genomes] |
rs6079348 | 1.00[AMR][1000 genomes] |
rs927564 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14176800-14184400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |