Variant report

Variant	rs6042465
Chromosome Location	chr20:13957734-13957735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1033860	1.00[AMR][1000 genomes]
rs1980702	1.00[AMR][1000 genomes]
rs2327828	1.00[AMR][1000 genomes]
rs2423771	1.00[AMR][1000 genomes]
rs2423776	1.00[AMR][1000 genomes]
rs3121496	1.00[AMR][1000 genomes]
rs6033874	1.00[AMR][1000 genomes]
rs6033875	1.00[AMR][1000 genomes]
rs6033900	1.00[AMR][1000 genomes]
rs6042440	1.00[AMR][1000 genomes]
rs6042481	1.00[AMR][1000 genomes]
rs6042482	1.00[AMR][1000 genomes]
rs6042504	1.00[AMR][1000 genomes]
rs6042540	1.00[AMR][1000 genomes]
rs6042546	1.00[AMR][1000 genomes]
rs6042587	1.00[AMR][1000 genomes]
rs6079320	1.00[AMR][1000 genomes]
rs6079343	1.00[AMR][1000 genomes]
rs6079347	1.00[AMR][1000 genomes]
rs6079348	1.00[AMR][1000 genomes]
rs927564	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13957200-13958000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr20:13957600-13958000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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