Variant report

Variant	rs6079343
Chromosome Location	chr20:14168801-14168802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1033860	1.00[AMR][1000 genomes]
rs1118572	1.00[AMR][1000 genomes]
rs1980702	1.00[AMR][1000 genomes]
rs204623	1.00[AMR][1000 genomes]
rs204624	1.00[AMR][1000 genomes]
rs2327828	1.00[AMR][1000 genomes]
rs2423771	1.00[AMR][1000 genomes]
rs2423776	1.00[AMR][1000 genomes]
rs3121496	1.00[AMR][1000 genomes]
rs6033874	1.00[AMR][1000 genomes]
rs6033875	1.00[AMR][1000 genomes]
rs6033900	1.00[AMR][1000 genomes]
rs6042465	1.00[AMR][1000 genomes]
rs6042481	1.00[AMR][1000 genomes]
rs6042482	1.00[AMR][1000 genomes]
rs6042504	1.00[AMR][1000 genomes]
rs6042540	1.00[AMR][1000 genomes]
rs6042546	1.00[AMR][1000 genomes]
rs6042580	1.00[AFR][1000 genomes]
rs6042587	1.00[AMR][1000 genomes]
rs6079320	1.00[AMR][1000 genomes]
rs6079347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6079348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs927564	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv585438	chr20:14054163-14171905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1058887	chr20:14080114-14173534	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv532514	chr20:14097780-14288315	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14168400-14169400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:14168800-14169600	Enhancers	Brain Substantia Nigra	brain
3	chr20:14168800-14170000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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