Variant report

Variant	rs6034171
Chromosome Location	chr20:15380660-15380661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11907040	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1233718	1.00[TSI][hapmap]
rs1233719	1.00[TSI][hapmap]
rs1233725	1.00[TSI][hapmap]
rs1233733	1.00[TSI][hapmap]
rs1233735	1.00[TSI][hapmap]
rs1233737	1.00[TSI][hapmap]
rs6034170	1.00[TSI][hapmap]
rs6034176	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6043255	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7272766	1.00[MEX][hapmap]
rs7274409	1.00[MEX][hapmap]
rs8126259	1.00[TSI][hapmap]
rs996395	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv524481	chr20:15007730-15382919	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1058890	chr20:15234769-15388360	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6034171	FABP4	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15379000-15381600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr20:15379600-15381400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:15379600-15381600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:15380000-15381000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:15380200-15381200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:15380400-15381200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr20:15380600-15381000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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