Variant report

Variant	rs7274409
Chromosome Location	chr20:15503257-15503258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11481215	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11907040	1.00[MEX][hapmap]
rs16995959	0.88[YRI][hapmap]
rs16996278	1.00[MEX][hapmap]
rs56897784	0.89[AFR][1000 genomes]
rs56951313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57292062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59248946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6034171	1.00[MEX][hapmap]
rs6034176	1.00[MEX][hapmap]
rs6034269	1.00[MEX][hapmap]
rs6043255	1.00[MEX][hapmap]
rs7272526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7272766	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15499400-15504000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:15502200-15504600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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