Variant report
Variant | rs6034184 |
---|---|
Chromosome Location | chr20:15404328-15404329 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:15400360..15402078-chr20:15403721..15405394,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16995985 | 1.00[EUR][1000 genomes] |
rs16996043 | 1.00[EUR][1000 genomes] |
rs16996120 | 1.00[EUR][1000 genomes] |
rs6043263 | 1.00[EUR][1000 genomes] |
rs6043264 | 1.00[YRI][hapmap] |
rs6043266 | 1.00[EUR][1000 genomes] |
rs6043280 | 1.00[EUR][1000 genomes] |
rs6043281 | 1.00[EUR][1000 genomes] |
rs6043382 | 1.00[EUR][1000 genomes] |
rs6043383 | 1.00[EUR][1000 genomes] |
rs741393 | 0.95[YRI][hapmap] |
rs741394 | 0.96[YRI][hapmap] |
rs8123048 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv3487040 | chr20:15403947-15404343 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
6 | esv3487039 | chr20:15403962-15404372 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
7 | esv3487038 | chr20:15403969-15404337 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
8 | esv3487037 | chr20:15404000-15404333 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
No data |