Variant report

Variant	rs6043280
Chromosome Location	chr20:15421432-15421433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11906284	0.93[YRI][hapmap]
rs16995985	1.00[EUR][1000 genomes]
rs16996043	1.00[EUR][1000 genomes]
rs16996120	1.00[EUR][1000 genomes]
rs6043263	1.00[EUR][1000 genomes]
rs6043266	0.93[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043274	0.96[YRI][hapmap]
rs6043281	1.00[EUR][1000 genomes]
rs6043382	1.00[EUR][1000 genomes]
rs6043383	1.00[EUR][1000 genomes]
rs6074888	0.80[YRI][hapmap]
rs8123048	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15419400-15421600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr20:15419800-15421600	Enhancers	Colon Smooth Muscle	Colon
3	chr20:15420000-15421800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr20:15420200-15421800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:15420200-15421800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:15420200-15421800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:15420200-15421800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:15420200-15422000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15420200-15422000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr20:15420200-15422200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr20:15420400-15421800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr20:15420600-15422200	Enhancers	Fetal Heart	heart
13	chr20:15420800-15421800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr20:15420800-15421800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr20:15421000-15421600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr20:15421000-15421800	Enhancers	Adipose Nuclei	Adipose
17	chr20:15421200-15421600	Enhancers	GM12878-XiMat	blood
18	chr20:15421200-15426600	Weak transcription	Fetal Intestine Small	intestine
19	chr20:15421400-15427000	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links