Variant report
| Variant | rs6043274 |
|---|---|
| Chromosome Location | chr20:15411323-15411324 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11906284 | 1.00[YRI][hapmap] |
| rs16995985 | 1.00[EUR][1000 genomes] |
| rs16996043 | 1.00[EUR][1000 genomes] |
| rs16996120 | 1.00[EUR][1000 genomes] |
| rs4814372 | 0.82[YRI][hapmap] |
| rs6034187 | 0.83[YRI][hapmap] |
| rs6043262 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6043263 | 1.00[EUR][1000 genomes] |
| rs6043264 | 1.00[GIH][hapmap];0.93[MKK][hapmap] |
| rs6043265 | 0.83[YRI][hapmap] |
| rs6043266 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043270 | 0.83[YRI][hapmap] |
| rs6043271 | 1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap] |
| rs6043273 | 0.82[YRI][hapmap] |
| rs6043280 | 0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6043281 | 1.00[EUR][1000 genomes] |
| rs6043382 | 1.00[EUR][1000 genomes] |
| rs6043383 | 1.00[EUR][1000 genomes] |
| rs6074888 | 0.85[YRI][hapmap] |
| rs741393 | 1.00[GIH][hapmap] |
| rs8123048 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
