Variant report

Variant	rs6043270
Chromosome Location	chr20:15406124-15406125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11906284	0.82[YRI][hapmap]
rs16995750	0.81[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs389269	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs433078	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4814364	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4814365	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4814366	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4814367	1.00[ASN][1000 genomes]
rs4814368	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4814369	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs4814372	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs6034182	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034187	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6043265	0.95[YRI][hapmap]
rs6043266	0.83[YRI][hapmap]
rs6043273	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6043274	0.83[YRI][hapmap]
rs6074888	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074891	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6074893	0.85[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6079804	0.80[CHB][hapmap]
rs6079806	0.90[CHB][hapmap]
rs6079807	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs6079808	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6079809	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6079810	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6079811	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6079816	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6079817	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs6079819	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6079820	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6079822	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6079823	0.81[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6079824	0.83[ASN][1000 genomes]
rs6079825	0.81[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6079829	0.86[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6079832	0.81[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs888205	0.88[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs927919	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs927920	0.80[YRI][hapmap]
rs932823	0.86[CEU][hapmap];0.80[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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