Variant report
| Variant | rs4814367 |
|---|---|
| Chromosome Location | chr20:15401992-15401993 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:15400360..15402078-chr20:15403721..15405394,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16995750 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs389269 | 0.97[ASN][1000 genomes] |
| rs433078 | 0.97[ASN][1000 genomes] |
| rs4814364 | 1.00[ASN][1000 genomes] |
| rs4814365 | 1.00[ASN][1000 genomes] |
| rs4814366 | 1.00[ASN][1000 genomes] |
| rs4814368 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6034182 | 1.00[ASN][1000 genomes] |
| rs6074888 | 1.00[ASN][1000 genomes] |
| rs6074893 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6079804 | 0.80[AMR][1000 genomes] |
| rs6079806 | 0.82[AMR][1000 genomes] |
| rs6079809 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6079810 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6079811 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6079820 | 1.00[ASN][1000 genomes] |
| rs6079823 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6079824 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6079825 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6079829 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6079832 | 0.83[ASN][1000 genomes] |
| rs888205 | 0.98[ASN][1000 genomes] |
| rs927919 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:15401000-15403000 | Weak transcription | Colon Smooth Muscle | Colon |
