Variant report

Variant	rs6074893
Chromosome Location	chr20:15419872-15419873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16995750	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389269	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs433078	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4814364	0.83[ASN][1000 genomes]
rs4814365	0.83[ASN][1000 genomes]
rs4814366	0.83[ASN][1000 genomes]
rs4814367	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4814368	1.00[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4814369	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs4814372	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs6034182	0.82[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6034187	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs6043270	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs6043273	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs6074888	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs6074891	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6079807	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs6079808	0.94[CEU][hapmap];0.82[JPT][hapmap]
rs6079809	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6079810	1.00[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6079811	1.00[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6079816	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs6079817	1.00[CEU][hapmap]
rs6079819	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6079820	0.83[ASN][1000 genomes]
rs6079822	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6079823	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6079824	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6079825	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6079829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6079832	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888205	0.81[CEU][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs927919	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs932823	1.00[CEU][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15419400-15421600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr20:15419600-15420200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:15419800-15420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:15419800-15421600	Enhancers	Colon Smooth Muscle	Colon

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