Variant report
| Variant | rs6079806 |
|---|---|
| Chromosome Location | chr20:15393240-15393241 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs389269 | 1.00[CHB][hapmap] |
| rs433078 | 1.00[CHB][hapmap] |
| rs4814367 | 0.82[AMR][1000 genomes] |
| rs4814368 | 1.00[CHB][hapmap] |
| rs4814369 | 1.00[CHB][hapmap] |
| rs4814372 | 1.00[CHB][hapmap] |
| rs6034182 | 1.00[CHB][hapmap] |
| rs6034187 | 1.00[CHB][hapmap] |
| rs6043270 | 0.90[CHB][hapmap] |
| rs6043273 | 1.00[CHB][hapmap] |
| rs6074888 | 1.00[CHB][hapmap] |
| rs6074891 | 1.00[CHB][hapmap] |
| rs6079804 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6079807 | 1.00[CHB][hapmap] |
| rs6079808 | 1.00[CHB][hapmap] |
| rs6079809 | 1.00[CHB][hapmap];0.84[AMR][1000 genomes] |
| rs6079810 | 1.00[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs6079811 | 1.00[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs6079816 | 1.00[CHB][hapmap] |
| rs6079817 | 0.81[CHB][hapmap] |
| rs6079819 | 1.00[CHB][hapmap] |
| rs6079822 | 1.00[CHB][hapmap] |
| rs888205 | 1.00[CHB][hapmap] |
| rs927919 | 1.00[CHB][hapmap];0.81[AMR][1000 genomes] |
| rs932823 | 0.90[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:15392400-15393400 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
