Variant report
Variant | rs6043265 |
---|---|
Chromosome Location | chr20:15398762-15398763 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11906284 | 0.84[YRI][hapmap] |
rs4814369 | 0.95[YRI][hapmap] |
rs4814372 | 0.95[YRI][hapmap] |
rs6034182 | 0.81[YRI][hapmap] |
rs6034187 | 0.96[YRI][hapmap] |
rs6043266 | 0.85[YRI][hapmap];0.81[AFR][1000 genomes] |
rs6043270 | 0.95[YRI][hapmap] |
rs6043273 | 0.96[YRI][hapmap] |
rs6043274 | 0.83[YRI][hapmap] |
rs6074888 | 1.00[YRI][hapmap] |
rs73272909 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |