Variant report

Variant	rs6034555
Chromosome Location	chr20:16602797-16602798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4813230	0.90[ASN][1000 genomes]
rs4813231	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4813232	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs4814518	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6044174	0.90[ASN][1000 genomes]
rs6044175	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080303	0.81[CHB][hapmap]
rs6080312	0.85[CHB][hapmap]
rs6080332	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6080333	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6080334	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6080338	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135800	0.81[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6034555	C20orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16598400-16605600	Weak transcription	Fetal Lung	lung
2	chr20:16601600-16603400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:16601800-16603200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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